Positive regulation of NF-kappaB transcription factor activity

pathway activity — cross-omics
GO:0051092Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Positive regulation of NF-kappaB transcription factor activity pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LCP2, IL2RG, and BTK, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVLCP2 →+0.967+0.170<.001.00237
COADIL2RG →+1.073+0.180<.001.00237
LSCCBTK →+0.914+0.236.002.00337
LSCCTLR8 →+0.937+0.275.002<.00136
CCRCCTNFSF13B →+0.809+0.171<.001<.00136
HNSCARHGAP9 →+0.670+0.157<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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