Positive regulation of DNA-binding transcription factor activity

pathway activity — cross-omics
GO:0051091Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Positive regulation of DNA-binding transcription factor activity pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ASB2, GSS, and PLCB4, each associated with the pathway in up to 1 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADASB2 →-1.047-0.124<.001.00131
COADGSS →+0.538+0.130.004<.00131
COADPLCB4 →+1.929+0.108.007.00131
COADPIGU →+0.743+0.130<.001<.00131
COADMAPK3 →-0.535-0.141.004<.00131
COADHOMER2 →-0.265-0.131<.001<.00131
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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