mRNA transport

Across TCGA patient cohorts, RNA activity of the mRNA transport pathway is significantly associated with the RNA expression of multiple genes, with the UVM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are DDX17, CEP128, and PNN, each associated with the pathway in up to 34 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, mRNA transport activity versus DDX17 in UVM (Pearson r = 0.90).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UVM	DDX17 →	+1.481	+0.072	<.001	<.001	3	34
THYM	CEP128 →	+1.085	+0.038	<.001	<.001	3	34
UVM	PNN →	+1.657	+0.073	<.001	<.001	3	34
DLBC	TTI1 →	+1.032	+0.062	<.001	<.001	3	34
UVM	SMCHD1 →	+1.703	+0.076	<.001	<.001	3	34
DLBC	CEP192 →	+1.705	+0.087	<.001	.001	3	34

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0051028 vs DDX17 — UVM

Explore this scatter interactively →