Negative regulation of immune response

Across TCGA cell cohorts, RNA activity of the Negative regulation of immune response pathway is significantly associated with the RNA expression of multiple genes, with the LUNG_NSCLC_LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TMEM30B, CAVIN1, and VIM, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of immune response activity versus TMEM30B in LUNG_NSCLC_LUAD (Pearson r = -0.42).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUAD	TMEM30B →	-1.998	-0.146	.004	.005	3	9
BREAST	CAVIN1 →	+3.914	+0.203	<.001	.003	3	7
OESOPHAGUS	VIM →	+4.820	+0.195	<.001	<.001	3	7
LUNG_SCLC	TMC4 →	-2.759	-0.278	<.001	<.001	3	7
LUNG_NSCLC_LUAD	DCAF11 →	-0.787	-0.182	<.001	<.001	3	6
URINARY_TRACT	EXPH5 →	-1.491	-0.281	.007	.002	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0050777 vs TMEM30B — LUNG_NSCLC_LUAD

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