Mesenchymal cell differentiation

Across TCGA patient cohorts, RNA activity of the Mesenchymal cell differentiation pathway is significantly associated with the protein abundance of multiple proteins, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SNX9, BGN, and C8B, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Mesenchymal cell differentiation activity versus SNX9 in LSCC (Pearson r = 0.36).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	SNX9 →	+0.321	+0.044	<.001	<.001	3	10
UCEC	BGN →	+0.898	+0.052	<.001	<.001	3	10
COAD	C8B →	+0.512	+0.019	.001	.009	3	10
OV	AEBP1 →	+0.909	+0.046	<.001	<.001	3	10
OV	CLEC3B →	+0.752	+0.032	.001	.001	3	10
BRCA	DCN →	+1.035	+0.033	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0048762 vs SNX9 — LSCC

Explore this scatter interactively →