Positive regulation of skeletal muscle fiber development

pathway activity — cross-omics
GO:0048743Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Positive regulation of skeletal muscle fiber development pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NIBAN2, FHL2, and MIR27B, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMNIBAN2 →+0.844+0.140<.001<.00135
GBMFHL2 →+0.555+0.097<.001.00834
LSCCMIR27B →+0.527+0.163.004.00133
PDACZNF514 →+0.257+0.229.006<.00133
PDACSH3GLB2 →+0.434+0.263<.001<.00133
GBMCMTM7 →+0.552+0.144<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration