Neuron fate determination

pathway activity — cross-omics
GO:0048664Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Neuron fate determination pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are RBFOX2, ATP6AP1L, and HMGA1P8, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCARBFOX2 →+0.424+0.102.004.00924
UCECATP6AP1L →+0.574+0.213.001.00133
CCRCCHMGA1P8 →-0.309-0.657.009.00232
COADPIGZ →+1.006+0.151<.001.00332
COADRAB9B →-0.419-0.127.001<.00132
COADUTF1 →-0.055-0.124.003.00232
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration