Positive regulation of skeletal muscle tissue development

Across TCGA patient cohorts, RNA activity of the Positive regulation of skeletal muscle tissue development pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TCTEX1D1, MAP3K7CL, and VRK1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of skeletal muscle tissue development activity versus TCTEX1D1 in GBM (Pearson r = 0.10).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	TCTEX1D1 →	+0.849	+0.242	.009	<.001	3	4
GBM	MAP3K7CL →	+0.652	+0.197	.001	.001	3	4
LSCC	VRK1 →	-0.596	-0.209	.004	.001	3	4
LSCC	NINL →	-0.519	-0.179	<.001	<.001	3	4
HNSC	AMPD1 →	+0.757	+0.272	.002	.001	3	4
LUAD	HROB →	-0.607	-0.190	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0048643 vs TCTEX1D1 — GBM

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