Glycolipid transport

Across TCGA cell cohorts, RNA activity of the Glycolipid transport pathway is significantly associated with the RNA expression of multiple genes, with the LUNG_NSCLC_LUSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PLTP, CLN3, and LDHD, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Glycolipid transport activity versus PLTP in LUNG_NSCLC_LUSC (Pearson r = 0.69).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUSC	PLTP →	+4.578	+0.156	<.001	.001	3	10
BREAST	CLN3 →	+1.423	+0.099	<.001	.004	3	10
LARGE_INTESTINE	LDHD →	+1.112	+0.105	.002	.001	3	8
BREAST	GLTP →	+0.923	+0.106	<.001	.001	2	8
LUNG_SCLC	TEX264 →	+0.698	+0.127	<.001	<.001	3	6
BLOOD_Leukemia	SMIM1 →	+1.742	+0.070	.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0046836 vs PLTP — LUNG_NSCLC_LUSC

Explore this scatter interactively →