L-cysteine metabolic process

pathway activity — cross-omics
GO:0046439Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the L-cysteine metabolic process pathway is significantly associated with the protein abundance of multiple proteins, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are OLFML3, SGCB, and SMC2, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAOLFML3 →+0.773+0.155<.001<.00137
HNSCSGCB →+0.499+0.111<.001<.00136
LUADSMC2 →-0.633-0.129<.001<.00136
PDACXRCC6_T455 →-0.547-0.129<.001<.00136
BRCACCNK →-0.270-0.097<.001.00336
BRCADCN →+1.077+0.156<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration