Negative regulation of vitamin metabolic process

Across TCGA cell cohorts, RNA activity of the Negative regulation of vitamin metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the BLOOD_Leukemia cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MRPL30, DCAF17, and NPM3, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, MRPL30 grouped by Negative regulation of vitamin metabolic process-low versus -high activity in BLOOD_Leukemia.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Leukemia	MRPL30 →	+0.689	+1.125	<.001	<.001	3	5
BLOOD_Leukemia	DCAF17 →	+0.658	+0.979	.009	.003	2	5
OVARY	NPM3 →	+0.944	+0.908	.002	.006	2	5
OESOPHAGUS	MRPL4 →	+0.633	+1.031	.004	.006	3	4
OESOPHAGUS	SCLY →	+1.072	+1.110	.003	.005	3	4
LUNG_NSCLC_LUAD	ORC2 →	+0.451	+1.064	.002	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

MRPL30 by Negative regulation of vitamin metabolic process activity — BLOOD_Leukemia

Explore this box plot interactively →