Positive regulation of ossification

Across TCGA patient cohorts, RNA activity of the Positive regulation of ossification pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LINC02038, AMT, and DDX39B-AS1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of ossification activity versus LINC02038 in UCEC (Pearson r = -0.38).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	LINC02038 →	-1.044	-0.830	<.001	<.001	3	3
CCRCC	AMT →	+0.130	+0.827	.005	.002	3	3
CCRCC	DDX39B-AS1 →	+0.271	+0.841	.004	.009	3	3
CCRCC	BDNF-AS →	+0.305	+0.875	.004	.005	3	3
PDAC	SMIM31 →	+1.000	+0.614	.001	<.001	3	3
GBM	GLI3 →	+0.610	+0.716	.005	.001	2	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0045778 vs LINC02038 — UCEC

Explore this scatter interactively →