Negative regulation of neuron differentiation

Across TCGA patient cohorts, RNA activity of the Negative regulation of neuron differentiation pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are IPCEF1, CCR2, and RIPK3, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of neuron differentiation activity versus IPCEF1 in LSCC (Pearson r = -0.03).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	IPCEF1 →	-0.432	-0.528	.004	.003	3	5
HNSC	CCR2 →	-1.122	-0.674	<.001	<.001	3	4
HNSC	RIPK3 →	-0.875	-0.672	<.001	<.001	3	4
GBM	RGS18 →	-0.528	-0.240	<.001	.002	3	4
LSCC	PRKCB →	-0.830	-0.696	<.001	<.001	3	4
HNSC	GAPT →	-0.794	-0.605	<.001	.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0045665 vs IPCEF1 — LSCC

Explore this scatter interactively →