G-quadruplex DNA unwinding

pathway activity — cross-omics
GO:0044806Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the G-quadruplex DNA unwinding pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MIR145, MAP1A, and BRMS1L, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAMIR145 →-1.020-0.660.003<.00134
GBMMAP1A →-0.585-0.158.005.00225
PDACBRMS1L →+0.236+0.291<.001.00433
GBMWRN →+0.354+0.151<.001.00133
GBMDNAJB7 →+0.213+0.146.009.00433
GBMRBM4B →+0.309+0.127.005.00633
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration