Obsolete late nucleophagy

pathway activity — cross-omics
GO:0044805Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete late nucleophagy pathway is significantly associated with the protein abundance of multiple proteins, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SPTBN1_S257, CACNA2D2, and HK2, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PDACSPTBN1_S257 →+0.414+0.033<.001<.00135
GBMCACNA2D2 →+0.763+0.077<.001<.00135
PDACHK2 →-0.604-0.056<.001<.00135
BRCAMYEF2 →+0.576+0.040<.001<.00135
BRCAOSBPL3 →-0.328-0.040<.001<.00135
UCECAHNAK2_S5036 →-0.941-0.091.008.00934
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration