Obsolete histone H4 acetylation

pathway activity — cross-omics
GO:0043967Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone H4 acetylation pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are USP21, CHTOP, and ZBTB12, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCUSP21 →+0.600+0.964<.001<.00136
LSCCCHTOP →+0.391+0.611<.001.00136
LSCCZBTB12 →+0.519+0.742<.001<.00136
HNSCNVL →+0.421+0.245.004.00436
HNSCZNF551 →+0.637+0.238<.001.00536
HNSCACBD6 →+0.510+0.296.005.00636
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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