Obsolete histone H3 acetylation

pathway activity — cross-omics
GO:0043966Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete histone H3 acetylation pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PSMA5, CEP57L1, and CCDC18, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCPSMA5 →+0.307+0.588.002.00233
LSCCCEP57L1 →+0.520+0.637<.001.00233
UCECCCDC18 →+0.467+0.712.003.00833
UCECTBC1D31 →+0.425+0.531.002.00533
PDACISCA2 →+0.259+0.740.002<.00133
PDACHID1 →-0.542-0.508<.001.00233
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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