Regulation of skeletal muscle tissue regeneration

Across TCGA patient cohorts, RNA activity of the Regulation of skeletal muscle tissue regeneration pathway is significantly associated with the protein abundance of multiple proteins, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are HOPX, CPNE2, and CSRP1, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of skeletal muscle tissue regeneration activity versus HOPX in COAD (Pearson r = -0.16).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	HOPX →	+0.898	+0.043	<.001	<.001	3	7
BRCA	CPNE2 →	+0.363	+0.058	<.001	<.001	3	7
COAD	CSRP1 →	+0.868	+0.049	<.001	<.001	3	6
LUAD	PLS3 →	+0.510	+0.111	<.001	<.001	3	6
LSCC	TRIP6 →	+0.260	+0.100	<.001	.002	3	5
HNSC	BICD2_S823 →	+1.183	+0.185	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0043416 vs HOPX — COAD

Explore this scatter interactively →