"Regulation of CD4-positive, alpha-beta T cell differentiation"

Across TCGA patient cohorts, RNA activity of the "Regulation of CD4-positive, alpha-beta T cell differentiation" pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RCSD1, SAMSN1_S107, and SAMSN1_S23, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, "Regulation of CD4-positive, alpha-beta T cell differentiation" activity versus RCSD1 in GBM (Pearson r = 0.77).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	RCSD1 →	+0.577	+0.105	<.001	<.001	3	10
OV	SAMSN1_S107 →	+0.831	+0.030	<.001	<.001	3	10
LSCC	SAMSN1_S23 →	+0.744	+0.055	<.001	<.001	3	10
GBM	SASH3 →	+0.562	+0.114	<.001	<.001	3	10
BRCA	SERPINB9 →	+0.505	+0.042	<.001	<.001	3	10
GBM	SKAP2 →	+0.820	+0.109	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0043370 vs RCSD1 — GBM

Explore this scatter interactively →