Negative regulation of vascular permeability

Across TCGA cell cohorts, RNA activity of the Negative regulation of vascular permeability pathway is significantly associated with the RNA expression of multiple genes, with the LUNG_SCLC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PLGLB2, SIRPB2, and TRIM38, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, PLGLB2 grouped by Negative regulation of vascular permeability-low versus -high activity in LUNG_SCLC.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_SCLC	PLGLB2 →	+0.855	+1.180	.006	.006	2	4
UPPER_AERODIGESTIVE_TRACT	SIRPB2 →	-1.211	-1.329	.009	.001	3	3
BLOOD_Leukemia	TRIM38 →	-0.823	-0.940	.006	.007	3	3
BLOOD_Leukemia	HBEGF →	-1.609	-0.974	<.001	.004	3	3
BLOOD_Leukemia	FADS3 →	-2.409	-1.319	.004	<.001	3	3
BLOOD_Leukemia	P4HA2 →	-1.769	-1.110	.004	.006	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

PLGLB2 by Negative regulation of vascular permeability activity — LUNG_SCLC

Explore this box plot interactively →