Regulation of vascular permeability

Across TCGA patient cohorts, RNA activity of the Regulation of vascular permeability pathway is significantly associated with the protein abundance of multiple proteins, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are TNS2_S120, ALYREF, and MMRN2, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of vascular permeability activity versus TNS2_S120 in CCRCC (Pearson r = 0.75).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	TNS2_S120 →	+0.510	+0.071	<.001	<.001	3	9
OV	ALYREF →	-0.402	-0.035	<.001	.003	3	9
CCRCC	MMRN2 →	+0.685	+0.078	<.001	<.001	3	9
BRCA	SOD3 →	+0.714	+0.031	<.001	<.001	3	8
CCRCC	TNS2 →	+0.437	+0.076	<.001	<.001	3	8
OV	WDR36 →	-0.352	-0.056	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0043114 vs TNS2_S120 — CCRCC

Explore this scatter interactively →