Response to hydrogen peroxide

Across TCGA patient cohorts, RNA activity of the Response to hydrogen peroxide pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ZNF483, GRM3, and RAP1GAP, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Response to hydrogen peroxide activity versus ZNF483 in GBM (Pearson r = -0.26).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	ZNF483 →	-0.430	-0.091	.009	.003	3	4
BRCA	GRM3 →	-0.058	-0.106	.001	<.001	3	4
BRCA	RAP1GAP →	-0.853	-0.121	.001	.003	3	4
GBM	MEPE →	-0.638	-0.128	.007	.001	3	4
OV	WBP2 →	-0.557	-0.168	.005	.001	3	3
OV	SPIRE1 →	-0.755	-0.177	.006	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0042542 vs ZNF483 — GBM

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