Cellular modified amino acid biosynthetic process

Across TCGA patient cohorts, RNA activity of the Cellular modified amino acid biosynthetic process pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are MICAL1, UBASH3B, and GATM, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cellular modified amino acid biosynthetic process activity versus MICAL1 in GBM (Pearson r = -0.09).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	MICAL1 →	-0.409	-0.062	<.001	<.001	3	6
COAD	UBASH3B →	-0.673	-0.021	.007	.005	1	8
LUAD	GATM →	+0.504	+0.031	<.001	<.001	3	6
UCEC	HSDL2 →	+0.600	+0.086	<.001	<.001	3	6
UCEC	CHDH →	+0.584	+0.096	<.001	<.001	3	6
UCEC	DDAH1 →	+0.645	+0.092	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0042398 vs MICAL1 — GBM

Explore this scatter interactively →