DNA strand invasion

pathway activity — cross-omics
GO:0042148Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the DNA strand invasion pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are RAD51, CENPM, and RAD51AP1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECRAD51 →+0.792+0.606<.001.00135
LUADCENPM →+0.457+0.094.007.00234
LUADRAD51AP1 →+0.885+0.126.007.00434
HNSCWRN →+0.563+0.204.005.00325
LUADCDCA2 →+1.111+0.142.003.00234
LUADTRIP13 →+0.754+0.090.007.00334
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration