Obsolete neurotransmitter catabolic process

pathway activity — cross-omics
GO:0042135Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete neurotransmitter catabolic process pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ABAT, NEIL3, and PLK4, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAABAT →+1.032+0.148<.001<.00138
UCECNEIL3 →-0.762-0.194<.001<.00137
UCECPLK4 →-0.929-0.190<.001<.00137
COADCKS1B →-0.711-0.159<.001.00237
BRCACDC45 →-1.164-0.216<.001<.00137
UCECCENPI →-0.925-0.187<.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration