Viral RNA genome replication

Across TCGA patient cohorts, RNA activity of the Viral RNA genome replication pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HJURP, CENPO, and NUF2, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Viral RNA genome replication activity versus HJURP in LUAD (Pearson r = 0.02).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	HJURP →	+1.187	+0.243	<.001	.001	3	8
LUAD	CENPO →	+0.644	+0.249	<.001	<.001	3	8
LUAD	NUF2 →	+1.049	+0.211	<.001	.003	3	8
GBM	MMS22L →	+0.604	+0.245	<.001	.001	3	8
LUAD	CDK1 →	+0.948	+0.235	<.001	.001	3	8
LUAD	RNA5SP323 →	+0.866	+0.224	.002	.004	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0039694 vs HJURP — LUAD

Explore this scatter interactively →