Nerve growth factor signaling pathway

Across TCGA cell cohorts, RNA activity of the Nerve growth factor signaling pathway pathway is significantly associated with the RNA expression of multiple genes, with the BLOOD_Leukemia cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CD274, TGFBI, and GALNT2, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, CD274 grouped by Nerve growth factor signaling pathway-low versus -high activity in BLOOD_Leukemia.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Leukemia	CD274 →	+1.359	+1.500	.003	<.001	3	6
STOMACH	TGFBI →	+3.417	+1.251	.005	<.001	3	5
BLOOD_Leukemia	GALNT2 →	+1.484	+1.261	.003	.002	3	5
BLOOD_Leukemia	IFIT3 →	+1.084	+1.508	.007	<.001	2	6
LARGE_INTESTINE	LBH →	+2.193	+1.532	.001	<.001	3	5
LUNG_NSCLC_LUAD	CPLANE1 →	+0.814	+0.877	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

CD274 by Nerve growth factor signaling pathway activity — BLOOD_Leukemia

Explore this box plot interactively →