Germ cell proliferation

pathway activity — cross-omics
GO:0036093Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Germ cell proliferation pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HJURP, SAPCD2, and NDC80, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVHJURP →-0.726-0.153.004.00435
LSCCSAPCD2 →-0.798-0.146.001<.00135
LUADNDC80 →-0.675-0.160.007<.00135
LUADMSH2 →-0.361-0.122.004.00126
LSCCL2HGDH →-0.422-0.132.005.00235
OVCENPA →-0.981-0.202.003.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration