Photoreceptor cell outer segment organization

Across TCGA patient cohorts, RNA activity of the Photoreceptor cell outer segment organization pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are KIF9, LRRC23, and CFAP157, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Photoreceptor cell outer segment organization activity versus KIF9 in LSCC (Pearson r = 0.05).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	KIF9 →	+0.365	+0.294	.002	.009	3	6
OV	LRRC23 →	+1.127	+0.316	<.001	.005	3	5
UCEC	CFAP157 →	+1.390	+0.632	<.001	.003	3	5
UCEC	SNTN →	+1.399	+0.565	.001	.004	3	5
LUAD	DNAH7 →	+0.576	+0.337	<.001	.001	3	5
LSCC	DNAI1 →	+0.792	+0.226	<.001	.009	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0035845 vs KIF9 — LSCC

Explore this scatter interactively →