Hepatic stellate cell activation

pathway activity — cross-omics
GO:0035733Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Hepatic stellate cell activation pathway is significantly associated with the RNA expression of multiple genes, with the DLBC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are S1PR1, MSRB3, and LDB2, each associated with the pathway in up to 29 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
DLBCS1PR1 →+1.281+0.076.001.001329
READMSRB3 →+1.600+0.085<.001<.001328
MESOLDB2 →+1.177+0.052<.001<.001229
UVMCD302 →+0.994+0.034<.001<.001328
UCSSELENOP →+1.563+0.047<.001<.001327
BRCAECM2 →+1.383+0.090<.001<.001327
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration