Regulation of tissue remodeling

Across TCGA patient cohorts, RNA activity of the Regulation of tissue remodeling pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SPP1, CSF1R, and LINC02585, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of tissue remodeling activity versus SPP1 in BRCA (Pearson r = 0.39).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	SPP1 →	+1.286	+0.251	<.001	<.001	3	6
GBM	CSF1R →	+0.701	+0.157	<.001	<.001	3	6
UCEC	LINC02585 →	-0.805	-0.330	<.001	.008	3	6
BRCA	RIN3 →	+0.543	+0.235	.004	.003	3	5
GBM	FCGR2A →	+1.117	+0.262	<.001	<.001	3	5
GBM	MPP1 →	+0.437	+0.194	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0034103 vs SPP1 — BRCA

Explore this scatter interactively →