Nucleoside bisphosphate catabolic process

pathway activity — cross-omics
GO:0033869Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Nucleoside bisphosphate catabolic process pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are FAM149B1, APBB1, and DNAJC18, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCFAM149B1 →-0.367-0.111<.001.00135
LSCCAPBB1 →-0.481-0.108.002.00235
GBMDNAJC18 →-0.484-0.142.001<.00134
BRCASNHG29 →-0.619-0.136.003.00334
GBMRTL6 →-0.414-0.092.002.00725
GBMXRCC6 →-0.309-0.098.001.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration