Cell proliferation in midbrain

pathway activity — cross-omics
GO:0033278Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Cell proliferation in midbrain pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are FZD6, TMEM170B, and NFATC2, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMFZD6 →+1.028+0.795.002<.00136
PDACTMEM170B →-0.344-0.630.003.00926
LSCCNFATC2 →-0.683-0.401<.001.00335
HNSCSEPTIN1 →-0.843-0.668<.001<.00135
PDACMYCT1 →-0.428-0.583.002.00334
PDACRAB39B →-0.357-0.592.002.00334
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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