Regulation of myeloid cell apoptotic process

Across TCGA patient cohorts, RNA activity of the Regulation of myeloid cell apoptotic process pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LINC01597, GSDMC, and INTS4, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of myeloid cell apoptotic process activity versus LINC01597 in COAD (Pearson r = -0.11).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	LINC01597 →	-0.619	-0.779	<.001	<.001	3	4
UCEC	GSDMC →	+0.892	+0.227	<.001	.004	3	4
LSCC	INTS4 →	-0.373	-0.703	<.001	.002	3	4
HNSC	ZNF577 →	-0.700	-0.615	<.001	.007	2	4
COAD	ADCY5 →	-0.435	-0.602	.004	.002	3	3
COAD	CLDN34 →	-0.067	-0.739	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0033032 vs LINC01597 — COAD

Explore this scatter interactively →