Low-density lipoprotein receptor particle metabolic process

pathway activity — cross-omics
GO:0032799Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Low-density lipoprotein receptor particle metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the CHOL cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MYLIP, ABCA2, and LENG8, each associated with the pathway in up to 31 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CHOLMYLIP →+1.509+0.107<.001<.001331
ESCAABCA2 →+1.339+0.125<.001<.001330
KIRPLENG8 →+1.211+0.058<.001<.001327
DLBCTUBGCP6 →+0.885+0.094<.001.003326
DLBCSZT2 →+0.666+0.061<.001.001326
DLBCSH3BP5-AS1 →+0.913+0.062<.001.001326
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration