Low-density lipoprotein receptor particle metabolic process

pathway activity — cross-omics
GO:0032799Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Low-density lipoprotein receptor particle metabolic process pathway is significantly associated with the protein abundance of multiple proteins, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are MAP1B_S1881, ZFP36_S186, and ZPR1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCMAP1B_S1881 →+0.762+0.084<.001.00134
PDACZFP36_S186 →-0.573-0.042.001.00834
BRCAZPR1 →-0.376-0.075<.001<.00134
GBMFTH1 →+0.591+0.067<.001<.00134
BRCAMYEF2 →+0.488+0.052.003<.00134
OVLEMD2_S166 →+0.990+0.056<.001.00234
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration