Regulation of microvillus organization

Across TCGA patient cohorts, RNA activity of the Regulation of microvillus organization pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are FAM110C, RAP1GAP, and LONRF3, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of microvillus organization activity versus FAM110C in GBM (Pearson r = 0.04).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	FAM110C →	+1.108	+0.212	<.001	<.001	3	6
BRCA	RAP1GAP →	+1.531	+0.247	<.001	<.001	3	6
LUAD	LONRF3 →	+0.693	+0.191	.001	.003	3	6
BRCA	RAB1B →	+0.620	+0.155	<.001	.005	3	5
BRCA	MAOB →	+1.443	+0.145	.001	.007	3	5
HNSC	KCTD12 →	-0.457	-0.586	.008	.003	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0032530 vs FAM110C — GBM

Explore this scatter interactively →