Alanine transport

Across TCGA cell cohorts, RNA activity of the Alanine transport pathway is significantly associated with the RNA expression of multiple genes, with the OVARY cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SLC7A5, SLC3A2, and LACC1, each associated with the pathway in up to 11 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Alanine transport activity versus SLC7A5 in OVARY (Pearson r = 0.52).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OVARY	SLC7A5 →	+1.990	+0.231	.001	.001	2	11
OVARY	SLC3A2 →	+1.111	+0.222	.005	.002	2	7
BLOOD_Lymphoma	LACC1 →	-1.353	-0.213	.003	.009	3	5
LUNG_SCLC	SPSB1 →	+1.231	+0.201	.003	.001	3	5
BLOOD_Lymphoma	GGA2 →	-1.593	-0.229	<.001	.001	3	4
BLOOD_Lymphoma	CSK →	-1.193	-0.256	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0032328 vs SLC7A5 — OVARY

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