Dense core granule localization

Across TCGA patient cohorts, RNA activity of the Dense core granule localization pathway is significantly associated with the protein abundance of multiple proteins, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are MAP2, MAP2_S1155, and THNSL1, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Dense core granule localization activity versus MAP2 in LSCC (Pearson r = -0.05).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	MAP2 →	+0.767	+0.100	<.001	<.001	3	8
LSCC	MAP2_S1155 →	+1.054	+0.092	<.001	<.001	3	7
GBM	THNSL1 →	+0.261	+0.080	<.001	<.001	3	6
OV	IKZF2_S433 →	-1.047	-0.099	.001	.002	3	6
LSCC	MAP2_T1649 →	+1.164	+0.084	<.001	<.001	3	6
LSCC	STK10 →	-0.242	-0.060	<.001	.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0032253 vs MAP2 — LSCC

Explore this scatter interactively →