Obsolete positive regulation of histone methylation

pathway activity — cross-omics
GO:0031062Cross-omicsSHRNA → SHRNACellPairwise association · TCGA cohorts

Across TCGA cell cohorts, RNA activity of the Obsolete positive regulation of histone methylation pathway is significantly associated with the shRNA dependency of multiple genes, with the OESOPHAGUS cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are MCRS1, KAT8, and KANSL3, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OESOPHAGUSMCRS1 →-0.341-0.259<.001<.00139
LARGE_INTESTINEKAT8 →-0.350-0.243<.001<.00138
LIVERKANSL3 →-0.327-0.235<.001.00136
LIVERKANSL1 →-0.306-0.233.001.00827
BLOOD_MyelomaCCND1 →+0.495+0.230.006.00435
BLOOD_LeukemiaABCC1 →+0.154+0.238.002.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration