Midbrain-hindbrain boundary development

pathway activity — cross-omics
GO:0030917Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Midbrain-hindbrain boundary development pathway is significantly associated with the protein abundance of multiple proteins, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are MMP2, RCC2, and ARHGAP1_S27, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECMMP2 →-0.614-0.075<.001.00836
BRCARCC2 →+0.348+0.085<.001<.00136
BRCAARHGAP1_S27 →-0.697-0.055.001.00436
COADNELFE →+0.171+0.038.001.00635
BRCAUBR5 →+0.225+0.080<.001<.00135
UCECYARS2 →+0.300+0.099<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration