Midbrain-hindbrain boundary development

pathway activity — cross-omics
GO:0030917Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Midbrain-hindbrain boundary development pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are KCTD1, SIGLEC31P, and MLKL, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCKCTD1 →+0.294+0.175.008.00233
CCRCCSIGLEC31P →-0.424-0.140.005.00433
HNSCMLKL →-0.446-0.620.003.00833
PDACZFYVE28 →-0.365-0.196<.001<.00133
GBMFTH1P7 →+0.583+0.215<.001.00133
LSCCCLEC4GP1 →-0.331-0.676.002.00733
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration