Regulation of vitamin metabolic process

Across TCGA patient cohorts, RNA activity of the Regulation of vitamin metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are GPAM, ATP5MC1, and MECR, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of vitamin metabolic process activity versus GPAM in OV (Pearson r = -0.21).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	GPAM →	-0.450	-0.126	.008	.007	3	3
BRCA	ATP5MC1 →	+0.384	+0.298	.003	.002	3	3
UCEC	MECR →	+0.414	+0.218	<.001	<.001	3	3
UCEC	PXDN →	-0.898	-0.237	.002	.001	3	3
BRCA	METTL2A →	+0.325	+0.355	.008	.004	3	3
LUAD	HHIPL2 →	+1.156	+0.594	.003	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0030656 vs GPAM — OV

Explore this scatter interactively →