Negative regulation of axon extension

Across TCGA cell cohorts, RNA activity of the Negative regulation of axon extension pathway is significantly associated with the RNA expression of multiple genes, with the LUNG_NSCLC_LUSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TSPAN4, GSDME, and OGFRL1, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of axon extension activity versus TSPAN4 in LUNG_NSCLC_LUSC (Pearson r = -0.40).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUSC	TSPAN4 →	-2.411	-0.128	.005	.006	2	10
PANCREAS	GSDME →	-1.941	-0.106	<.001	.001	3	8
KIDNEY	OGFRL1 →	-0.989	-0.068	.004	<.001	3	8
SOFT_TISSUE	UAP1 →	-1.459	-0.095	<.001	<.001	3	8
BONE	CCN2 →	-4.624	-0.104	<.001	<.001	3	8
BONE	LOXL2 →	-3.113	-0.084	.004	.006	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0030517 vs TSPAN4 — LUNG_NSCLC_LUSC

Explore this scatter interactively →