Obsolete ubiquitin-dependent ERAD pathway

pathway activity — cross-omics
GO:0030433Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete ubiquitin-dependent ERAD pathway pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CYBRD1, TIMP3, and DHX35, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCACYBRD1 →-1.077-0.146.002.00237
CCRCCTIMP3 →-1.566-0.303<.001<.00137
PDACDHX35 →-0.386-0.237<.001<.00136
BRCAPOLI →-0.724-0.188<.001<.00136
GBMWBP4 →-0.400-0.120<.001.00236
BRCAGSN →-0.551-0.163.005.00536
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration