Protein maturation by protein folding

pathway activity — cross-omics
GO:0022417Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Protein maturation by protein folding pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are WFS1, TMEM43, and TXNL4A, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMWFS1 →+0.468+0.070<.001<.00136
LUADTMEM43 →+0.229+0.029<.001.00134
GBMTXNL4A →-0.156-0.057.001<.00134
BRCAS100A16 →+0.446+0.035.007.00234
BRCASLC12A7_S997 →+0.528+0.037.002.00534
GBMSMARCD1 →-0.261-0.052<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration