Cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation

pathway activity — cross-omics
GO:0021937Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation pathway is significantly associated with the protein abundance of multiple proteins, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CASK, SSB, and THSD4, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCCASK →+0.330+0.148<.001.00836
LSCCSSB →+0.408+0.168<.001<.00135
LUADTHSD4 →+0.838+0.667<.001<.00135
LSCCKIAA0513 →-0.400-0.147<.001<.00134
LSCCRNMT →+0.413+0.162<.001<.00134
LSCCRPAIN →+0.369+0.201.001.00534
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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