Forebrain dorsal/ventral pattern formation

pathway activity — cross-omics
GO:0021798Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Forebrain dorsal/ventral pattern formation pathway is significantly associated with the protein abundance of multiple proteins, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are GLI3_S445, INTS9_S572, and EZH2_T487, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADGLI3_S445 →+0.877+0.131<.001<.00137
BRCAINTS9_S572 →-0.711-0.163<.001<.00136
LSCCEZH2_T487 →-0.702-0.149<.001<.00136
CCRCCFBXO3 →+0.162+0.064<.001.00436
LUADGLI3_S664 →+1.178+0.198<.001<.00136
CCRCCTARBP2 →-0.120-0.065.003.00536
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration