Cerebral cortex regionalization

pathway activity — cross-omics
GO:0021796Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Cerebral cortex regionalization pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are WRAP53, ALG3, and TBCCD1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECWRAP53 →+0.441+0.366.002.00335
UCECALG3 →+0.519+0.437.004<.00135
GBMTBCCD1 →+0.175+0.163.007.00735
BRCAIL6 →-0.980-0.252<.001<.00135
GBMMFNG →-0.573-0.254<.001<.00134
BRCAPIK3CG →-0.607-0.239.001.00234
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration