Hindbrain maturation

pathway activity — cross-omics
GO:0021578Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Hindbrain maturation pathway is significantly associated with the protein abundance of multiple proteins, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are RCN1, SAMHD1_S33, and SH3KBP1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCRCN1 →-0.464-0.079<.001<.00136
LSCCSAMHD1_S33 →-0.500-0.072<.001.00335
LSCCSH3KBP1 →-0.550-0.086<.001<.00135
LSCCSTRBP →+0.672+0.087<.001<.00135
GBMVAV1 →-0.473-0.091<.001<.00135
LSCCCARD9_S460 →-0.567-0.070<.001.00335
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration